COVID-19 Exclusion (Secondary Care) - Maximal Sensitivity

Codelist metadata

Coding system
ICD-10
Coding system release
2019-covid-expanded
Organisation
OpenSAFELY
Codelist ID
opensafely/covid-19-exclusion-secondary-care-maximal-sensitivity
Version ID
1fa5572b
Download CSV Download definition

Versions

  1. 1fa5572b Published
    Created: 24 Jan 2024 at 14:55

About

Methodology

To be used in conjunction with COVID-19 inclusion criteria. Codelist derived from exclusion codelists for RSV (checked by Jennifer Quint) and Influenza (checked by Charlotte Warren-Gash), see references. To see full outcome phenotypes see Github issue in references

References

Signed off by

  • Em Prestige, (Aug. 14, 2024)

Codelists are developed by a broad community of users for individual study purposes, which may or may not meet the needs of other studies. They should not be thought of as universal definitions of a particular condition.

We don't offer any guarantees about what they do or don't identify. Users should carefully check that any codelist meets their needs, and seek clinical input where appropriate.

I: Certain Infectious And Parasitic Diseases

  • Status:
    Included
    Name:
    Adenovirus as the cause of diseases classified to other chapters
    Code:
    (B970)
  • Status:
    Included
    Name:
    Adenovirus infection, unspecified site
    Code:
    (B340)
  • Status:
    Included
    Name:
    Conjunctivitis due to adenovirus H13.1
    Code:
    (B301)
  • Status:
    Included
    Name:
    Enterovirus as the cause of diseases classified to other chapters
    Code:
    (B971)
  • Status:
    Included
    Name:
    Enterovirus infection, unspecified site
    Code:
    (B341)
  • Status:
    Included
    Name:
    Keratoconjunctivitis due to adenovirus H19.2
    Code:
    (B300)
  • Status:
    Included
    Name:
    Measles complicated by pneumonia J17.1
    Code:
    (B052)
  • Status:
    Included
    Name:
    Mycoplasma pneumoniae [M. pneumoniae] as the cause of diseases classified to other chapters
    Code:
    (B960)
  • Status:
    Included
    Name:
    Respiratory syncytial virus as the cause of diseases classified to other chapters
    Code:
    (B974)

X: Diseases Of The Respiratory System

  • Status:
    Included
    Name:
    Abscess of lung with pneumonia
    Code:
    (J851)
  • Status:
    Included
    Name:
    Acute bronchiolitis due to human metapneumovirus
    Code:
    (J211)
  • Status:
    Included
    Name:
    Acute bronchiolitis due to respiratory syncytial virus
    Code:
    (J210)
  • Status:
    Included
    Name:
    Acute bronchitis
    Code:
    (J20)
    • Status:
      Included
      Name:
      Acute bronchitis due to Mycoplasma pneumoniae
      Code:
      (J200)
    • Status:
      Excluded
      Name:
      Acute bronchitis due to Haemophilus influenzae
      Code:
      (J201)
    • Status:
      Included
      Name:
      Acute bronchitis due to streptococcus
      Code:
      (J202)
    • Status:
      Included
      Name:
      Acute bronchitis due to coxsackievirus
      Code:
      (J203)
    • Status:
      Included
      Name:
      Acute bronchitis due to parainfluenza virus
      Code:
      (J204)
    • Status:
      Included
      Name:
      Acute bronchitis due to respiratory syncytial virus
      Code:
      (J205)
    • Status:
      Included
      Name:
      Acute bronchitis due to rhinovirus
      Code:
      (J206)
    • Status:
      Included
      Name:
      Acute bronchitis due to echovirus
      Code:
      (J207)
    • Status:
      Included
      Name:
      Acute bronchitis due to other specified organisms
      Code:
      (J208)
    • Status:
      Included
      Name:
      Acute bronchitis, unspecified
      Code:
      (J209)
  • Status:
    Included
    Name:
    Acute laryngitis and tracheitis
    Code:
    (J04)
    • Status:
      Included
      Name:
      Acute laryngitis
      Code:
      (J040)
    • Status:
      Included
      Name:
      Acute tracheitis
      Code:
      (J041)
    • Status:
      Included
      Name:
      Acute laryngotracheitis
      Code:
      (J042)
  • Status:
    Included
    Name:
    Acute obstructive laryngitis [croup] and epiglottitis
    Code:
    (J05)
    • Status:
      Included
      Name:
      Acute obstructive laryngitis [croup]
      Code:
      (J050)
    • Status:
      Included
      Name:
      Acute epiglottitis
      Code:
      (J051)
  • Status:
    Included
    Name:
    Acute sinusitis
    Code:
    (J01)
    • Status:
      Included
      Name:
      Acute maxillary sinusitis
      Code:
      (J010)
    • Status:
      Included
      Name:
      Acute frontal sinusitis
      Code:
      (J011)
    • Status:
      Included
      Name:
      Acute ethmoidal sinusitis
      Code:
      (J012)
    • Status:
      Included
      Name:
      Acute sphenoidal sinusitis
      Code:
      (J013)
    • Status:
      Included
      Name:
      Acute pansinusitis
      Code:
      (J014)
    • Status:
      Included
      Name:
      Other acute sinusitis
      Code:
      (J018)
    • Status:
      Included
      Name:
      Acute sinusitis, unspecified
      Code:
      (J019)
  • Status:
    Included
    Name:
    Acute tonsillitis
    Code:
    (J03)
    • Status:
      Excluded
      Name:
      Streptococcal tonsillitis
      Code:
      (J030)
    • Status:
      Included
      Name:
      Acute tonsillitis due to other specified organisms
      Code:
      (J038)
    • Status:
      Included
      Name:
      Acute tonsillitis, unspecified
      Code:
      (J039)
  • Status:
    Included
    Name:
    Bronchitis, not specified as acute or chronic
    Code:
    (J40)
  • Status:
    Included
    Name:
    Influenza due to identified seasonal influenza virus
    Code:
    (J10)
    • Status:
      Included
      Name:
      Influenza with pneumonia, seasonal influenza virus identified
      Code:
      (J100)
    • Status:
      Included
      Name:
      Influenza with other respiratory manifestations, seasonal influenza virus identified
      Code:
      (J101)
    • Status:
      Included
      Name:
      Influenza with other manifestations, seasonal influenza virus identified
      Code:
      (J108)
  • Status:
    Included
    Name:
    Influenza due to identified zoonotic or pandemic influenza virus
    Code:
    (J09)
  • Status:
    Included
    Name:
    Influenza, virus not identified
    Code:
    (J11)
    • Status:
      Included
      Name:
      Influenza with pneumonia, virus not identified
      Code:
      (J110)
    • Status:
      Included
      Name:
      Influenza with other respiratory manifestations, virus not identified
      Code:
      (J111)
    • Status:
      Included
      Name:
      Influenza with other manifestations, virus not identified
      Code:
      (J118)
  • Status:
    Included
    Name:
    Pneumonia due to Mycoplasma pneumoniae
    Code:
    (J157)
  • Status:
    Included
    Name:
    Pneumonia due to other infectious organisms, not elsewhere classified
    Code:
    (J16)
    • Status:
      Excluded
      Name:
      Chlamydial pneumonia
      Code:
      (J160)
    • Status:
      Included
      Name:
      Pneumonia due to other specified infectious organisms
      Code:
      (J168)
  • Status:
    Included
    Name:
    Pneumonia in diseases classified elsewhere
    Code:
    (J17)
    • Status:
      Excluded
      Name:
      Pneumonia in bacterial diseases classified elsewhere
      Code:
      (J170)
    • Status:
      Included
      Name:
      Pneumonia in viral diseases classified elsewhere
      Code:
      (J171)
    • Status:
      Excluded
      Name:
      Pneumonia in mycoses
      Code:
      (J172)
    • Status:
      Excluded
      Name:
      Pneumonia in parasitic diseases
      Code:
      (J173)
    • Status:
      Included
      Name:
      Pneumonia in other diseases classified elsewhere
      Code:
      (J178)
  • Status:
    Included
    Name:
    Pneumonia, organism unspecified
    Code:
    (J18)
    • Status:
      Included
      Name:
      Bronchopneumonia, unspecified
      Code:
      (J180)
    • Status:
      Included
      Name:
      Lobar pneumonia, unspecified
      Code:
      (J181)
    • Status:
      Included
      Name:
      Hypostatic pneumonia, unspecified
      Code:
      (J182)
    • Status:
      Included
      Name:
      Other pneumonia, organism unspecified
      Code:
      (J188)
    • Status:
      Included
      Name:
      Pneumonia, unspecified
      Code:
      (J189)
  • Status:
    Included
    Name:
    Viral pneumonia, not elsewhere classified
    Code:
    (J12)
    • Status:
      Included
      Name:
      Adenoviral pneumonia
      Code:
      (J120)
    • Status:
      Included
      Name:
      Respiratory syncytial virus pneumonia
      Code:
      (J121)
    • Status:
      Included
      Name:
      Parainfluenza virus pneumonia
      Code:
      (J122)
    • Status:
      Included
      Name:
      Human metapneumovirus pneumonia
      Code:
      (J123)
    • Status:
      Included
      Name:
      Other viral pneumonia
      Code:
      (J128)
    • Status:
      Included
      Name:
      Viral pneumonia, unspecified
      Code:
      (J129)

Xvi: Certain Conditions Originating In The Perinatal Period

  • Status:
    Included
    Name:
    Congenital pneumonia
    Code:
    (P23)
    • Status:
      Included
      Name:
      Congenital pneumonia due to viral agent
      Code:
      (P230)
    • Status:
      Excluded
      Name:
      Congenital pneumonia due to Chlamydia
      Code:
      (P231)
    • Status:
      Excluded
      Name:
      Congenital pneumonia due to staphylococcus
      Code:
      (P232)
    • Status:
      Excluded
      Name:
      Congenital pneumonia due to streptococcus, group B
      Code:
      (P233)
    • Status:
      Excluded
      Name:
      Congenital pneumonia due to Escherichia coli
      Code:
      (P234)
    • Status:
      Excluded
      Name:
      Congenital pneumonia due to Pseudomonas
      Code:
      (P235)
    • Status:
      Excluded
      Name:
      Congenital pneumonia due to other bacterial agents
      Code:
      (P236)
    • Status:
      Included
      Name:
      Congenital pneumonia due to other organisms
      Code:
      (P238)
    • Status:
      Included
      Name:
      Congenital pneumonia, unspecified
      Code:
      (P239)

This page shows the search terms that were used to build the codelist. Concepts that match the search terms, but which were excluded, are in faint grey.

adenovirus

Included 4 out of 4 matching concepts.

Show matching concepts
  • Adenovirus as the cause of diseases classified to other chapters (B970)
  • Adenovirus infection, unspecified site (B340)
  • Conjunctivitis due to adenovirus H13.1 (B301)
  • Keratoconjunctivitis due to adenovirus H19.2 (B300)

bronchitis

Included 11 out of 18 matching concepts.

Show matching concepts
  • Acute bronchitis (J20)
  • Acute bronchitis due to Haemophilus influenzae (J201)
  • Acute bronchitis due to Mycoplasma pneumoniae (J200)
  • Acute bronchitis due to coxsackievirus (J203)
  • Acute bronchitis due to echovirus (J207)
  • Acute bronchitis due to other specified organisms (J208)
  • Acute bronchitis due to parainfluenza virus (J204)
  • Acute bronchitis due to respiratory syncytial virus (J205)
  • Acute bronchitis due to rhinovirus (J206)
  • Acute bronchitis due to streptococcus (J202)
  • Acute bronchitis, unspecified (J209)
  • Bronchitis and pneumonitis due to chemicals, gases, fumes and vapours (J680)
  • Bronchitis, not specified as acute or chronic (J40)
  • Mixed simple and mucopurulent chronic bronchitis (J418)
  • Mucopurulent chronic bronchitis (J411)
  • Simple and mucopurulent chronic bronchitis (J41)
  • Simple chronic bronchitis (J410)
  • Unspecified chronic bronchitis (J42)

enterovirus

Included 2 out of 2 matching concepts.

Show matching concepts
  • Enterovirus as the cause of diseases classified to other chapters (B971)
  • Enterovirus infection, unspecified site (B341)

influenz

Included 11 out of 17 matching concepts.

Show matching concepts
  • Acute bronchitis due to Haemophilus influenzae (J201)
  • Acute bronchitis due to parainfluenza virus (J204)
  • Haemophilus influenzae [H. influenzae] as the cause of diseases classified to other chapters (B963)
  • Haemophilus influenzae infection, unspecified site (A492)
  • Influenza due to identified seasonal influenza virus (J10)
  • Influenza due to identified zoonotic or pandemic influenza virus (J09)
  • Influenza with other manifestations, seasonal influenza virus identified (J108)
  • Influenza with other manifestations, virus not identified (J118)
  • Influenza with other respiratory manifestations, seasonal influenza virus identified (J101)
  • Influenza with other respiratory manifestations, virus not identified (J111)
  • Influenza with pneumonia, seasonal influenza virus identified (J100)
  • Influenza with pneumonia, virus not identified (J110)
  • Influenza, virus not identified (J11)
  • Need for immunization against influenza (Z251)
  • Parainfluenza virus pneumonia (J122)
  • Pneumonia due to Haemophilus influenzae (J14)
  • Sepsis due to Haemophilus influenzae (A413)

laryngitis

Included 7 out of 10 matching concepts.

Show matching concepts
  • Acute epiglottitis (J051)
  • Acute laryngitis (J040)
  • Acute laryngitis and tracheitis (J04)
  • Acute laryngotracheitis (J042)
  • Acute obstructive laryngitis [croup] (J050)
  • Acute obstructive laryngitis [croup] and epiglottitis (J05)
  • Acute tracheitis (J041)
  • Chronic laryngitis (J370)
  • Chronic laryngitis and laryngotracheitis (J37)
  • Chronic laryngotracheitis (J371)

metapneumovirus

Included 2 out of 2 matching concepts.

Show matching concepts
  • Acute bronchiolitis due to human metapneumovirus (J211)
  • Human metapneumovirus pneumonia (J123)

mycoplasma

Included 3 out of 4 matching concepts.

Show matching concepts
  • Acute bronchitis due to Mycoplasma pneumoniae (J200)
  • Mycoplasma infection, unspecified site (A493)
  • Mycoplasma pneumoniae [M. pneumoniae] as the cause of diseases classified to other chapters (B960)
  • Pneumonia due to Mycoplasma pneumoniae (J157)

parainfluenza

Included 2 out of 2 matching concepts.

Show matching concepts
  • Acute bronchitis due to parainfluenza virus (J204)
  • Parainfluenza virus pneumonia (J122)

pneumonia

Included 29 out of 57 matching concepts.

Show matching concepts
  • Abscess of lung with pneumonia (J851)
  • Abscess of lung without pneumonia (J852)
  • Acute bronchitis due to Mycoplasma pneumoniae (J200)
  • Adenoviral pneumonia (J120)
  • Bacterial pneumonia, not elsewhere classified (J15)
  • Bacterial pneumonia, unspecified (J159)
  • Bronchopneumonia, unspecified (J180)
  • Chlamydial pneumonia (J160)
  • Congenital pneumonia (P23)
  • Congenital pneumonia due to Chlamydia (P231)
  • Congenital pneumonia due to Escherichia coli (P234)
  • Congenital pneumonia due to Pseudomonas (P235)
  • Congenital pneumonia due to other bacterial agents (P236)
  • Congenital pneumonia due to other organisms (P238)
  • Congenital pneumonia due to staphylococcus (P232)
  • Congenital pneumonia due to streptococcus, group B (P233)
  • Congenital pneumonia due to viral agent (P230)
  • Congenital pneumonia, unspecified (P239)
  • HIV disease resulting in Pneumocystis jirovecii pneumonia (B206)
  • Human metapneumovirus pneumonia (J123)
  • Hypostatic pneumonia, unspecified (J182)
  • Influenza with pneumonia, seasonal influenza virus identified (J100)
  • Influenza with pneumonia, virus not identified (J110)
  • Klebsiella pneumoniae [K. pneumoniae] as the cause of diseases classified to other chapters (B961)
  • Lobar pneumonia, unspecified (J181)
  • Measles complicated by pneumonia J17.1 (B052)
  • Mycoplasma pneumoniae [M. pneumoniae] as the cause of diseases classified to other chapters (B960)
  • Other bacterial pneumonia (J158)
  • Other pneumonia, organism unspecified (J188)
  • Other viral pneumonia (J128)
  • Parainfluenza virus pneumonia (J122)
  • Pneumonia due to Escherichia coli (J155)
  • Pneumonia due to Haemophilus influenzae (J14)
  • Pneumonia due to Klebsiella pneumoniae (J150)
  • Pneumonia due to Mycoplasma pneumoniae (J157)
  • Pneumonia due to Pseudomonas (J151)
  • Pneumonia due to Streptococcus pneumoniae (J13)
  • Pneumonia due to other Gram-negative bacteria (J156)
  • Pneumonia due to other infectious organisms, not elsewhere classified (J16)
  • Pneumonia due to other specified infectious organisms (J168)
  • Pneumonia due to other streptococci (J154)
  • Pneumonia due to staphylococcus (J152)
  • Pneumonia due to streptococcus, group B (J153)
  • Pneumonia in bacterial diseases classified elsewhere (J170)
  • Pneumonia in diseases classified elsewhere (J17)
  • Pneumonia in mycoses (J172)
  • Pneumonia in other diseases classified elsewhere (J178)
  • Pneumonia in parasitic diseases (J173)
  • Pneumonia in viral diseases classified elsewhere (J171)
  • Pneumonia, organism unspecified (J18)
  • Pneumonia, unspecified (J189)
  • Respiratory syncytial virus pneumonia (J121)
  • Sepsis due to Streptococcus pneumoniae (A403)
  • Streptococcus pneumoniae as the cause of diseases classified to other chapters (B953)
  • Varicella pneumonia J17.1 (B012)
  • Viral pneumonia, not elsewhere classified (J12)
  • Viral pneumonia, unspecified (J129)

respiratory syncytial virus

Included 4 out of 4 matching concepts.

Show matching concepts
  • Acute bronchiolitis due to respiratory syncytial virus (J210)
  • Acute bronchitis due to respiratory syncytial virus (J205)
  • Respiratory syncytial virus as the cause of diseases classified to other chapters (B974)
  • Respiratory syncytial virus pneumonia (J121)

rhinovirus

Included 1 out of 1 matching concepts.

Show matching concepts
  • Acute bronchitis due to rhinovirus (J206)

sinusitis

Included 8 out of 16 matching concepts.

Show matching concepts
  • Acute ethmoidal sinusitis (J012)
  • Acute frontal sinusitis (J011)
  • Acute maxillary sinusitis (J010)
  • Acute pansinusitis (J014)
  • Acute sinusitis (J01)
  • Acute sinusitis, unspecified (J019)
  • Acute sphenoidal sinusitis (J013)
  • Chronic ethmoidal sinusitis (J322)
  • Chronic frontal sinusitis (J321)
  • Chronic maxillary sinusitis (J320)
  • Chronic pansinusitis (J324)
  • Chronic sinusitis (J32)
  • Chronic sinusitis, unspecified (J329)
  • Chronic sphenoidal sinusitis (J323)
  • Other acute sinusitis (J018)
  • Other chronic sinusitis (J328)

tonsillitis

Included 3 out of 6 matching concepts.

Show matching concepts
  • Acute tonsillitis (J03)
  • Acute tonsillitis due to other specified organisms (J038)
  • Acute tonsillitis, unspecified (J039)
  • Chronic tonsillitis (J350)
  • Herpesviral gingivostomatitis and pharyngotonsillitis (B002)
  • Streptococcal tonsillitis (J030)